Information for 2-CAGAGGACGC (Motif 4)

A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C
Reverse Opposite:
A C T G A T G C T C A G A G C T T G A C A T G C A C G T A T G C C A G T T A C G
p-value:1e-12
log p-value:-2.810e+01
Information Content per bp:1.655
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif8.59%
Number of Background Sequences with motif1715.1
Percentage of Background Sequences with motif3.60%
Average Position of motif in Targets50.9 +/- 25.8bp
Average Position of motif in Background50.7 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAGAGGACGC--
NCGCGGACGTTG
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T A C G T
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

Atf3/MA0605.1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGAGGACGC
--GATGACGT
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C
A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGGACGC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

SPIB/MA0081.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGGACGC
-AGAGGAA--
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C
A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGAGGACGC-
-AGAGGAAGTG
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T
A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

ZBTB7A/MA0750.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGGACGC-
TCGGTGGTCGCN
 A C G T A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T
A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGAGGACGC
AACAGGAAGT
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGGACGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CAGAGGACGC-
---AGCGCGCC
 A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C A C G T
A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGGACGC
CCAGACRSVB-
 A C G T A T G C G T C A T A C G T G C A T A C G A C T G T C G A A G T C T A C G T G A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T