Information for 2-CGGGAAATHCGGG (Motif 5)

A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C T G C T G A G T C A C G A T A C G T A C G T A G T C A G T C G T A C C T A G
p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.847
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.6 +/- 13.4bp
Average Position of motif in Background19.2 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGGGAAATHCGGG
NACAGGAAAT-----
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGGGAAATHCGGG
NACAGGAAAT-----
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGGAAATHCGGG
--GGAAANCCCC-
 A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGGGAAATHCGGG
--GGAAATTCCC-
 A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGGGAAATHCGGG
NNTGGAAANN----
 A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGGAAATHCGGG
-GGGAATTTCC--
 A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGGGAAATHCGGG
TGGCGGGAAAHB----
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T A C G T A C G T A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGGGAAATHCGGG
GGCGGGAAAH-----
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T A C G T A C G T A C G T A C G T A C G T

PB0012.1_Elf3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGGGAAATHCGGG
AACAAGGAAGTAA---
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGGGAAATHCGGG
GGCGGGAARN-----
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A C G T A C G T A A C G T G A C T G T A C A C T G A C T G A C T G
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T A C G T