Information for 3-CCGTGCCAGC (Motif 8)

A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
Reverse Opposite:
A C T G A T G C C A G T A C T G A C T G T A G C G T C A G T A C C A T G C T A G
p-value:1e-10
log p-value:-2.397e+01
Information Content per bp:1.827
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.15%
Number of Background Sequences with motif829.2
Percentage of Background Sequences with motif1.75%
Average Position of motif in Targets44.9 +/- 28.7bp
Average Position of motif in Background49.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CCGTGCCAGC-
--ATGCCAACC
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCGTGCCAGC
-CGTGCCAAG
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGTGCCAGC-----
ACTATGCCAACCTACC
 A C G T A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCGTGCCAGC
---TGCCAA-
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCGTGCCAGC
--TTGCCAAG
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGTGCCAGC-
--ATGCCCACC
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C A C G T
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCGTGCCAGC-
-VBTGWCAGCB
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C A C G T
A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGCCAGC
TKCTGTTCCA--
 A C G T A C G T A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCGTGCCAGC-
-GGTGCCAAGT
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCGTGCCAGC
CTGTTCCTGG
 A G T C G T A C A C T G C A G T A T C G A G T C A G T C G C T A A T C G T G A C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G