Information for 10-CTGGCTATGGTTCCCA (Motif 25)

A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
Reverse Opposite:
A C G T A T C G C T A G A C T G G T C A C G T A A G T C A G T C C T G A A G C T C T G A A C T G T G A C A G T C C G T A A C T G
p-value:1e-4
log p-value:-9.965e+00
Information Content per bp:1.909
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 2.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGGCTATGGTTCCCA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTGGCTATGGTTCCCA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA
----CCATTGTTC---
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA--
--------HTTTCCCASG
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA
---GCTGTGGTTT---
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA
---NCCATTGTTC---
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGGCTATGGTTCCCA-
-NNTTTATTGTTCTNNN
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A A C G T
A C G T G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTGGCTATGGTTCCCA-------
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

PB0173.1_Sox21_2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA--
-AATCAATTGTTCCGCTA
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A A C G T A C G T
A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTGGCTATGGTTCCCA
--GTCTGTGGTTT---
 A G T C A C G T A C T G A C T G A G T C A G C T C T G A A G C T A C T G A C T G A C G T A C G T A G T C A G T C A T G C C G T A
A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T