Information for 6-AGAGCAACAG (Motif 17)

C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G C T C T A G A G T C A C G T T A G C G A C T
p-value:1e-7
log p-value:-1.803e+01
Information Content per bp:1.847
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif135.9
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets48.3 +/- 24.0bp
Average Position of motif in Background51.7 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGAGCAACAG----
-ATGCAACAGGTGG
 C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGAGCAACAG------
-GAGCAACAGGTGGTT
 C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGAGCAACAG
SCCTAGCAACAG
 A C G T A C G T C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGAGCAACAG-
CCGCATAGCAACGGA
 A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGCAACAG-
TACCATAGCAACGGT
 A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------AGAGCAACAG-----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Spz1/MA0111.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGCAACAG-
AGGGTAACAGC
 C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGAGCAACAG---
---NHAACBGYYV
 C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGAGCAACAG-
-----CACAGN
 C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGAGCAACAG--
CAAACAACAACACCT
 A C G T A C G T A C G T C T G A A T C G C G T A A C T G G A T C C T G A C G T A G T A C G T C A A C T G A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T