Information for 2-YWKRYMTTWTRAT (Motif 6)

A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T
Reverse Opposite:
C G T A A C G T A G C T C G T A C G A T C G T A C G T A A C G T C T A G A G C T G T A C C G A T C T G A
p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.778
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 28.5bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT----
-NANTATTATAATTNNN
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT----
-NCGTATTATAATCNTA
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YWKRYMTTWTRAT----
-TTTAATTATAATTAAG
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.70
Offset:7
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT
-------TTTAAT
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT----
-NNTAATTATAATTNNN
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

Arid3b/MA0601.1/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:YWKRYMTTWTRAT---
-----ATATTAATTAA
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PB0001.1_Arid3a_1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT-------
---NNNTTTTAATTAANNNN
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT---
------TTTTTATTGC
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT----
-------NTTAATTAGN
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:YWKRYMTTWTRAT---
--------TTAATTAN
 A G C T C G A T A C T G C T G A A G T C G T C A A C G T A C G T C G T A A C G T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G