Information for 4-ARACCACAAW (Motif 3)

C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
Reverse Opposite:
G C T A G A C T G A C T C T A G A G C T A C T G A C T G A C G T G A C T G C A T
p-value:1e-20
log p-value:-4.667e+01
Information Content per bp:1.710
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.58%
Number of Background Sequences with motif690.6
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets52.3 +/- 25.7bp
Average Position of motif in Background52.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-ARACCACAAW
NAAACCACAG-
 A C G T C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:ARACCACAAW
AAACCGCAAA
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-ARACCACAAW-
NWAACCACADNN
 A C G T C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:ARACCACAAW
AAACCACANN
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:ARACCACAAW-
AAACCACAGAN
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:ARACCACAAW
AAACCGCAA-
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:ARACCACAAW
AAACCACAGC
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ARACCACAAW---
CATAAGACCACCATTAC
 A C G T A C G T A C G T A C G T C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ARACCACAAW-
GCGACCACACTG
 A C G T C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T A C G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ARACCACAAW
-ATCCAC---
 C G T A C T G A C G T A A G T C A G T C T C G A A G T C C T G A C T G A C G A T
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T