Information for 13-MTGCCAGCAWGAT (Motif 19)

G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
Reverse Opposite:
C G T A A G C T A G T C C G T A C G A T A C T G A T G C A C G T A C T G A C T G A T G C C G T A A C G T
p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.808
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.3 +/- 17.6bp
Average Position of motif in Background61.4 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:MTGCCAGCAWGAT
ATGCCAACC----
 G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---MTGCCAGCAWGAT
ACTATGCCAACCTACC
 A C G T A C G T A C G T G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-MTGCCAGCAWGAT-
CCACACAGCAGGAGA
 A C G T G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-MTGCCAGCAWGAT-
GAGCACAGCAGGACA
 A C G T G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-MTGCCAGCAWGAT-
CCACACAGCAGGAGA
 A C G T G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MTGCCAGCAWGAT
-DCTCAGCAGG--
 G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MTGCCAGCAWGAT
-TGCCAA------
 G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-MTGCCAGCAWGAT
CGTGCCAAG-----
 A C G T G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MTGCCAGCAWGAT
-NGTCAGCANTTT
 G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T
A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:MTGCCAGCAWGAT-
--CACAGCAGGGGG
 G T C A C G A T A T C G A G T C G T A C C G T A A T C G A G T C C G T A C G A T A C T G C T G A A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G