Information for 2-CTTTGAATGG (Motif 3)

G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G
Reverse Opposite:
T A G C G T A C C G T A C G A T G C A T G T A C C G T A T C G A C T G A C A T G
p-value:1e-24
log p-value:-5.538e+01
Information Content per bp:1.684
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1905.2
Percentage of Background Sequences with motif4.02%
Average Position of motif in Targets48.4 +/- 26.0bp
Average Position of motif in Background51.7 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTTTGAATGG
ATTTGAATT-
 G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTTTGAATGG-----
ACTATGAATGAATGAT
 A C G T G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGAATGG
GNCTATAAAAGG
 A C G T A C G T G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGAATGG----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGAATGG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTTGAATGG-
-TTTGAAACCG
 G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0068.1_Sox1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGAATGG---
NNNTATTGAATTGNNN
 A C G T A C G T A C G T G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTTTGAATGG
--TTGATTGN
 G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTTTGAATGG--
--GTTAATGGCC
 G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTTTGAATGG-----
---TGATTGGCTANN
 G T A C G A C T A G C T A C G T C A T G C G T A G C T A G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T