Information for 5-KGGCNCGGACAGGCCT (Motif 16)

A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
Reverse Opposite:
C G T A A C T G A C T G A T G C A T G C A C G T C T A G C G A T A G T C G A T C A C T G G T C A C T A G G A T C A G T C G T A C
p-value:1e-7
log p-value:-1.807e+01
Information Content per bp:1.741
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.0 +/- 14.4bp
Average Position of motif in Background43.8 +/- 2.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0180.1_Sp4_2/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT---
----NNGGCCACGCCTTTN
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT---
----SCAGYCADGCATGAC
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:10
Orientation:forward strand
Alignment:KGGCNCGGACAGGCCT--
----------AGGCCTNG
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT-
--TCCCAGMCRAGCCCC
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T A C G T
A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT
----CCAGACRSVB--
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT
----VBTGWCAGCB--
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:KGGCNCGGACAGGCCT
----CCAGACAG----
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.55
Offset:10
Orientation:forward strand
Alignment:KGGCNCGGACAGGCCT--
----------AGGCCTAG
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-KGGCNCGGACAGGCCT
RGGGCACTAACY-----
 A C G T A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:KGGCNCGGACAGGCCT
-----TTGACAGC---
 A C T G C T A G C A T G A G T C A C G T A G T C C A T G A C T G C G T A A G T C G T C A A T C G A T C G A G T C T A G C A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T