Information for 13-CGGGAGAGABCAC (Motif 17)

A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
Reverse Opposite:
T A C G A C G T C T A G T C G A A G C T A T G C A C G T A G T C A C G T A T G C G T A C G T A C T A C G
p-value:1e-10
log p-value:-2.349e+01
Information Content per bp:1.634
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif101.6
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets45.2 +/- 28.8bp
Average Position of motif in Background48.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGGGAGAGABCAC
TAGGGCAAAGGTCA-
 A C G T A C G T A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGGGAGAGABCAC
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CGGGAGAGABCAC
TGGGGCAAAGGTCA-
 A C G T A C G T A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CGGGAGAGABCAC
-----AAGGTCAC
 A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGGGAGAGABCAC
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGGAGAGABCAC
ANGNAAAGGTCA-
 A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CGGGAGAGABCAC
----AGRGGTCA-
 A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGGGAGAGABCAC
GAGGTCAAAGGTCA-
 A C G T A C G T A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGGAGAGABCAC----
GGCGAGGGGTCAAGGGC
 A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGGGAGAGABCAC
---CAAAGGTCAG
 A T G C C A T G C A T G T A C G C G T A T C A G G T C A T A C G T C G A A G C T G A T C G T C A A T G C
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G