Information for 10-AGGWCAKGATGCA (Motif 12)

C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A C G A T A G T C G T C A A C G T A C T G C G T A A G T C A G T C C G A T
p-value:1e-11
log p-value:-2.633e+01
Information Content per bp:1.911
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.5 +/- 26.3bp
Average Position of motif in Background29.2 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AGGWCAKGATGCA--
-----MTGATGCAAT
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:AGGWCAKGATGCA--
-----ATGATGCAAT
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGWCAKGATGCA
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGWCAKGATGCA
AGGTCA-------
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGGWCAKGATGCA---
---GGATGATGCAATA
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGWCAKGATGCA--
AGGTCACCCTGACCT
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGGWCAKGATGCA
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGWCAKGATGCA-
NAGGTCACNNTGACC
 A C G T C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGWCAKGATGCA-
----NATGTTGCAA
 C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGWCAKGATGCA
AGRGGTCA-------
 A C G T A C G T C G T A A C T G A C T G C G A T A G T C C G T A A C G T A C T G C G T A C G A T A C T G A G T C C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T