Information for 4-TGWTTGTAATGAAAAC (Motif 7)

A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C
Reverse Opposite:
A C T G A C G T A G C T A C G T G A C T A T G C C G T A A C G T A G C T T G C A G T A C C G T A C G T A C G T A A T G C C T G A
p-value:1e-14
log p-value:-3.452e+01
Information Content per bp:1.748
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.1 +/- 25.0bp
Average Position of motif in Background54.7 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGWTTGTAATGAAAAC
-CATTGTTATGCAAAT
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC
-CTTTGTTATGCAAAT
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGWTTGTAATGAAAAC-
---TTGCCATGGCAACC
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:TGWTTGTAATGAAAAC-
-------AATGGAAAAT
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

PB0033.1_Irf3_1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC--
----GAGAACCGAAACTG
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

PB0001.1_Arid3a_1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC--
-GGGTTTAATTAAAATTC
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T A C G T
A C G T T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TGWTTGTAATGAAAAC-
-------NATGGAAAAN
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC-
-CGTTGCCATGGCAACG
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC-
-------AAAGTAAACA
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TGWTTGTAATGAAAAC-
-------AAAGTAAACA
 A G C T A T C G G C A T C G A T A C G T C A T G A C G T C T G A C G T A C G A T A T C G C T G A C G T A C T G A G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A