Information for 14-CCACAGTGCVAAG (Motif 22)

A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C G T A C T G A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.635e+01
Information Content per bp:1.947
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.0 +/- 14.5bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCACAGTGCVAAG-
----GGTGCCAAGT
 A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

ZNF143/MA0088.2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCACAGTGCVAAG
TACCCACAATGCATTG
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTGCVAAG
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTGCVAAG
AAACCACAGAN-----
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCACAGTGCVAAG
NAAACCACAG-------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGTGCVAAG
AAACCACAGC------
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CCACAGTGCVAAG
----CGTGCCAAG
 A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCACAGTGCVAAG
-----TTGCCAAG
 A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCACAGTGCVAAG
-CACAGN------
 A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCACAGTGCVAAG----
-CANAGNNCAAAGTCCA
 A G T C A G T C C G T A A G T C C G T A A C T G A C G T A C T G A G T C T A C G C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A