Information for 9-GAGTCTCACACAT (Motif 11)

C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T A C T G C A G T T A C G T C G A T A C G C G T A A G T C G C A T A G T C
p-value:1e-13
log p-value:-2.999e+01
Information Content per bp:1.790
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif26.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets53.2 +/- 31.8bp
Average Position of motif in Background49.7 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGTCTCACACAT
-TGTCTGDCACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GAGTCTCACACAT
CTGTCTGTCACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:GAGTCTCACACAT
---KTTCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

TBX1/MA0805.1/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GAGTCTCACACAT
-----TCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAGTCTCACACAT
---TTTCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

TBX4/MA0806.1/Jaspar

Match Rank:6
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GAGTCTCACACAT
-----TCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GAGTCTCACACAT-
---TTTCACACCTN
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGTCTCACACAT-
-NTTTTCACACCTT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T A C G T
A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GAGTCTCACACAT
-----TCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:GAGTCTCACACAT
-----TCACACCT
 C T A G C G T A T A C G A C G T A T G C A C G T A G T C G T C A A G T C C G T A A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T