Information for 2-TCGCTCAGGGCCATTA (Motif 8)

A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
Reverse Opposite:
A G C T C G T A T C G A G A C T A C T G A C T G A G T C A G T C A G T C G A C T A T C G C G T A A C T G A G T C A C T G C T G A
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.6 +/- 15.0bp
Average Position of motif in Background57.8 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:8
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA--
--------GGCCATTAAC
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCGCTCAGGGCCATTA
GCCGCGCAGTGCGT---
 A C G T A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA
-AGGTCAAGGTCA---
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA
---NTCAAGGTCA---
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTCAGGGCCATTA
TTGGCATGGTGCCA---
 A C G T A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TCGCTCAGGGCCATTA
CTTGGCANNNTGCCAA--
 A C G T A C G T A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA
---BTCAAGGTCA---
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TCGCTCAGGGCCATTA
-GCCTCAGGGCAT---
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA
AAGTTCAAGGTCAGC-
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TCGCTCAGGGCCATTA
----TCAAGGTCATA-
 A G C T A G T C A C T G A G T C A C G T A T G C C G T A A C T G A C T G A C T G A G T C A G T C C G T A A G C T A C G T C T G A
A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T