Information for 1-GAGGCTGCCATTC (Motif 1)

A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A G C T A C T G A C T G G T A C C G T A A C T G A T G C A G T C A G C T A G T C
p-value:1e-16
log p-value:-3.720e+01
Information Content per bp:1.903
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.4 +/- 18.5bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAGGCTGCCATTC-
--GSCTGTCACTCA
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T
A C G T A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGGCTGCCATTC--
---NCTGTCAATCAN
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGGCTGCCATTC--
---SCTGTCAVTCAV
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGGCTGCCATTC
--GTCCGCCATTA
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GAGGCTGCCATTC--
---GCNGCCATCTTG
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCTGCCATTC--
NNNCAGCTGTCAATATN
 A C G T A C G T A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGGCTGCCATTC--
-----TKCTGTTCCA
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCTGCCATTC-
NGTAGGTTGGCATNNN
 A C G T A C G T A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GAGGCTGCCATTC--
---GCCGCCATCTTG
 A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTGCCATTC-
AAGCACCTGTCAATAT
 A C G T A C G T A C T G C T G A A C T G A T C G A G T C C G A T A C T G A G T C A G T C C T G A A C G T A C G T A G T C A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T