Information for 5-GGATGCACAGAGCATG (Motif 6)

T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C T G A G T C A C G T A G T C C G A T A C T G A G C T A C T G G T A C G T C A C A G T A G T C A G T C
p-value:1e-9
log p-value:-2.169e+01
Information Content per bp:1.788
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.9 +/- 25.0bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GGATGCACAGAGCATG---
----GAGCACAGCAGGACA
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGATGCACAGAGCATG---
----CCACACAGCAGGAGA
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GGATGCACAGAGCATG---
----CCACACAGCAGGAGA
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGATGCACAGAGCATG
------DCTCAGCAGG
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGATGCACAGAGCATG-
--ATGCATWATGCATRW
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T
A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGATGCACAGAGCATG--
----TCAGNGAGCGTGAC
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GGATGCACAGAGCATG---
-------CACAGCAGGGGG
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGATGCACAGAGCATG-
--ATGAATWATTCATGA
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G A C G T
A C G T A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GGATGCACAGAGCATG
-GCCGCGCAGTGCGT-
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GGATGCACAGAGCATG
---GGAACAAAGR---
 T C A G C T A G G C T A A C G T A C T G G T A C C T G A A G T C C G T A C T A G C G T A A C T G G T A C G T C A A C G T A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T