Information for 3-GCMGWGCCMWWGTCTS (Motif 4)

A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A C T A G C G T A A G T C C G T A C G A T A C T G A C T G A C T G A G T C C G T A T A G C A C T G A T C G A G T C
p-value:1e-10
log p-value:-2.515e+01
Information Content per bp:1.840
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 25.5bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS---
---GAGCCCTTGTCCCTAA
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:9
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS-
---------TWGTCTGV
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:9
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS-
---------CTGTCTGG
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS
------CCATTGTTTT
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GCMGWGCCMWWGTCTS
NNNANTGCAGTGCNNTT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS-
-------VBSYGTCTGG
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GCMGWGCCMWWGTCTS
-----NCCATTGTTY-
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCMGWGCCMWWGTCTS------
-----NNTNNTGTCTGGNNTNG
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCMGWGCCMWWGTCTS
------CCTTTGTT--
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCMGWGCCMWWGTCTS--
---NNNCCATTGTGTNAN
 A C T G A T G C T G A C A C T G C G A T A C T G A G T C A G T C G T A C G C T A C G A T A C T G A C G T A G T C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G