Information for 2-TGCCAGGACAGCGGMA (Motif 3)

A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
Reverse Opposite:
G C A T A C T G A T G C G T A C C T A G A T G C A C G T A T C G A C G T A T G C A G T C G A C T A C T G A C T G A T G C C T G A
p-value:1e-10
log p-value:-2.515e+01
Information Content per bp:1.723
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.2 +/- 14.5bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGACAGCGGMA
TTGCCAAG---------
 A C G T A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA-
------AACAGCTGCAG
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

SPIB/MA0081.1/Jaspar

Match Rank:3
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA
---------AGAGGAA
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA-
------GACAGCTGCAG
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGCCAGGACAGCGGMA
----AAAACAATGG--
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TGCCAGGACAGCGGMA
------CACAGN----
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA
-CCAGGAACAG-----
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGCCAGGACAGCGGMA
---NGNGACAGCTGCN
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA
------AACAGCTG--
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGCCAGGACAGCGGMA
CGTCTAGACA------
 A G C T A T C G T G A C A G T C C G T A C T A G A T C G G T C A A T G C C G T A A T C G G A T C C A T G A T C G T G A C C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T