Information for 8-AGGTTACCACTTGWMA (Motif 8)

C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
Reverse Opposite:
A C G T A C G T C G T A T G A C T C G A G C T A C T A G A C G T C T A G A T C G C G A T G T C A C T G A G T A C A T G C C G A T
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.665
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 20.7bp
Average Position of motif in Background26.7 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA---
--ATAACCACTTGAAAATT
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA
-----ACCACTTGAA-
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGGTTACCACTTGWMA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA--
--TAAGCCACTTGAAATT
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A A C G T A C G T
A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA
------CCACTTGAA-
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA
GGGTTACTANAGGTCA
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA--
-CATAACCACTTAACAAC
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A A C G T A C G T
A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Mycn/MA0104.3/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA
-----GCCACGTG---
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
A C G T A C G T A C G T A C G T A C G T C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGGTTACCACTTGWMA--
--TAAGCCACTTAACATT
 C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A A C G T A C G T
A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGTTACCACTTGWMA
TGTCGTGACCCCTTAAT-
 A C G T A C G T C G T A A T C G C A T G A G C T C A G T C G T A T A G C A G T C T C G A A G T C C A G T A G C T A C T G C G A T T G C A C G T A
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T