Information for 19-YCTKTRGCACAGCYAC (Motif 27)

A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C
Reverse Opposite:
C T A G G A C T C T A G A T C G A G T C G C A T A T C G A C G T A T C G T A G C A G T C T G C A G T A C C T G A T A C G T C A G
p-value:1e-8
log p-value:-1.958e+01
Information Content per bp:1.566
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.29%
Number of Background Sequences with motif366.9
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets49.7 +/- 26.6bp
Average Position of motif in Background49.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:YCTKTRGCACAGCYAC
-------CACAGN---
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---YCTKTRGCACAGCYAC
TGACCTTTGCCCCA-----
 A C G T A C G T A C G T A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:YCTKTRGCACAGCYAC-
---TTGCCATGGCAACN
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:4
Score:0.50
Offset:5
Orientation:forward strand
Alignment:YCTKTRGCACAGCYAC-
-----GCCACRCCCACY
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:YCTKTRGCACAGCYAC-
---TTGCCATGGCAACC
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---YCTKTRGCACAGCYAC
TGACCTTTGCCCTAN----
 A C G T A C G T A C G T A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:7
Score:0.49
Offset:4
Orientation:forward strand
Alignment:YCTKTRGCACAGCYAC---
----CCGCATAGCAACGGA
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:YCTKTRGCACAGCYAC-
--TGTTKCCTAGCAACM
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T
A C G T A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:YCTKTRGCACAGCYAC
---AAACCACAGC---
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:YCTKTRGCACAGCYAC--
------SCCTAGCAACAG
 A G T C A T G C A G C T C A T G A C G T T C A G A T C G T A G C T C G A T A G C C G T A T C A G T A G C G A T C C T G A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G