Information for 13-AGNTGWTAAGTGY (Motif 20)

C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C
Reverse Opposite:
T C A G A G T C G T C A A G T C A C G T A C G T G T C A C G T A A G T C C G T A C G T A T G A C G A C T
p-value:1e-8
log p-value:-2.072e+01
Information Content per bp:1.787
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets21.8 +/- 7.4bp
Average Position of motif in Background45.4 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.77
Offset:5
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY-
-----TTAAGTGGN
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.76
Offset:5
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY-
-----TTAAGTGGT
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY
-----TTAAGTGC
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY-----
-NTNNTTAAGTGGTTANN
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY-----
-NTNNTTAAGTGGNTNAN
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY-
----NTCAAGTGGN
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY----
-AATNTTAAGTGGNTNN
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Nkx2-5/MA0063.1/Jaspar

Match Rank:8
Score:0.68
Offset:5
Orientation:forward strand
Alignment:AGNTGWTAAGTGY
-----TTAATTG-
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY--
-----TTAAGTGCTT
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGNTGWTAAGTGY
AGGTGTTAAT---
 C T G A A C T G G A C T A C G T C T A G C G A T A C G T C G T A G T C A A C T G A C G T A C T G A G T C
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T