Information for 15-CTCTGCCTTACAA (Motif 19)

A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G A C G T C G T A C G T A A C T G C T A G A G T C C G T A A C T G C T G A A C T G
p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.924
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.5 +/- 10.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTCTGCCTTACAA--
--CTGTCTGTCACCT
 A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCTGCCTTACAA--
ATTTGCATAACAAAG
 A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTCTGCCTTACAA--
---TGTCTGDCACCT
 A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGCCTTACAA
TGACCTTTGCCCTAN--
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTCTGCCTTACAA----
--CCGTATTATAAACAA
 A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGCCTTACAA
TGACCTTTGCCCTA---
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTCTGCCTTACAA--
ATTTGCATAACAATG
 A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----CTCTGCCTTACAA
TGACCTTTGCCCCA---
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCTGCCTTACAA
GGTCTGGCAT----
 A C G T A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CTCTGCCTTACAA
GCTCGGSCTC----
 A C G T A G T C A G C T A G T C A C G T A C T G A G T C A G T C A C G T A C G T C G T A A G T C C G T A G T C A
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T A C G T