Information for 11-CTTCGCCAGCCGC (Motif 14)

A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A T C G A G T C A C G T A C T G A C T G A T G C A C T G C T G A C G T A A C T G
p-value:1e-9
log p-value:-2.183e+01
Information Content per bp:1.924
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 13.1bp
Average Position of motif in Background69.1 +/- 14.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTTCGCCAGCCGC-----
-CTCAGCAGCTGCTACTG
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTTCGCCAGCCGC
KGCCCTTCCCCA-----
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C
C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTTCGCCAGCCGC---
-AGCAACAGCCGCACC
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T A C G T A C G T
A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTTCGCCAGCCGC-
--NNVVCAGCTGBN
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T
A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTTCGCCAGCCGC
GCTTCC--------
 A C G T A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CTTCGCCAGCCGC--
-----NCAGCTGCTG
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTTCGCCAGCCGC--
-----CCAGACRSVB
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTTCGCCAGCCGC-
---NNGCAGCTGTC
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CTTCGCCAGCCGC
-----CCAGACAG
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CTTCGCCAGCCGC-
------CAGCTGNT
 A G T C A C G T A G C T A G T C A T C G A G T C A G T C C G T A A C T G A T G C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T