Information for 9-GGGMTTYCCC (Motif 10)

A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
Reverse Opposite:
A C T G A T C G T A C G C T G A G T C A C G T A C A T G A G T C T A G C G T A C
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.735
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.70%
Number of Background Sequences with motif601.5
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets65.5 +/- 22.2bp
Average Position of motif in Background49.8 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GGGMTTYCCC
NGGGGATTTCCC
 A C G T A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGGMTTYCCC-
GGGGATTCCCCC
 A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGGMTTYCCC
GGGGATTTCC-
 A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGGMTTYCCC
GGGAATTTCC-
 A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GGGMTTYCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GGGMTTYCCC
GGGGATTTCC-
 A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GGGMTTYCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGGMTTYCCC
GGGAATTTCC-
 A C G T A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GGGMTTYCCC-
-----TCCCCA
 A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGGMTTYCCC---
---HTTTCCCASG
 A C T G A T C G T C A G G T A C A C G T A C G T A G C T A T G C A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G