Information for 3-AGAGGGCTGCGGC (Motif 6)

C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
Reverse Opposite:
C T A G A G T C G T A C A C T G A G T C C G T A A C T G A T G C A G T C G T A C A G C T A G T C A C G T
p-value:1e-10
log p-value:-2.492e+01
Information Content per bp:1.896
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 26.3bp
Average Position of motif in Background62.0 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCTGCGGC
CAAGATGGCGGC---
 A C G T A C G T C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCTGCGGC
CAAGATGGCGGC---
 A C G T A C G T C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AGAGGGCTGCGGC
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGAGGGCTGCGGC-
---TGCCTGAGGCN
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2A/MA0003.3/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGAGGGCTGCGGC-
---NGCCTGAGGCN
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGAGGGCTGCGGC-
---NGCCTNAGGCN
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C A C G T
A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAGGGCTGCGGC
---TGGGTGTGGC
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAGGGCTGCGGC-
--MKGGGYGTGGCC
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C A C G T
A C G T A C G T G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAGGGCTGCGGC
--AGGCCTNG---
 C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C
A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCTGCGGC-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T G A A C T G A C T G A T C G A G T C A C G T A C T G G T A C A C T G A C T G A G T C A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G