Information for 2-GCAACTCAGG (Motif 26)

A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
Reverse Opposite:
T G A C G T A C C G A T A T C G C T G A A C T G A C G T C G A T C T A G T A G C
p-value:1e-9
log p-value:-2.115e+01
Information Content per bp:1.820
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif249.3
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets50.9 +/- 28.4bp
Average Position of motif in Background50.2 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAACTCAGG
AGCCACTCAAG
 A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCAACTCAGG
SCTGTCAVTCAV-
 A C G T A C G T A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCAACTCAGG
SCCTAGCAACAG---
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAACTCAGG
GGTGACTCATG
 A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCAACTCAGG
----CACAGN
 A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAACTCAGG
MRSCACTYAA-
 A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCAACTCAGG--
NNNGTAACTANGNNA
 A C G T A C G T A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------GCAACTCAGG
CAAAATCGAAACTAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G
T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GCAACTCAGG---
GGTCANYTGAGGWCA
 A C G T A C G T A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G A C G T A C G T A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Znf423/MA0116.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAACTCAGG-----
GGCACCCAGGGGTGC
 A T C G G A T C G C T A C G T A A G T C G A C T A T G C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C