Information for 3-TGGVAGACATGGC (Motif 7)

A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
Reverse Opposite:
C T A G A T G C G T A C C G T A A C G T A C T G A G C T A G T C A C G T A C G T A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.875e+01
Information Content per bp:1.845
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.6 +/- 13.6bp
Average Position of motif in Background61.7 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGGVAGACATGGC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGVAGACATGGC
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGVAGACATGGC
TGGAAAA------
 A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGGVAGACATGGC-
AGGGAAGTCATTTCT
 A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

NFAT5/MA0606.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGVAGACATGGC
NATGGAAAAN-----
 A C G T A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGGVAGACATGGC----
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGVAGACATGGC--
-TGATGACGTGGCAN
 A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C A C G T A C G T
A C G T G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGVAGACATGGC
TTGGCA--------
 A C G T A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGVAGACATGGC--
-GCAAAACATTACTA
 A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C A C G T A C G T
A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGVAGACATGGC
ATGTAAACADGS-
 A C G T A C T G A C T G T C G A C G T A C T A G C T G A A G T C G T C A A C G T A C T G A T C G A G T C
C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C A C G T