Information for 4-TAGGGCASGCASRTAC (Motif 6)

C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
Reverse Opposite:
T A C G A G C T G T C A A G T C T A G C A G C T A C T G A G T C T A G C A C G T A T C G G T A C G T A C A G T C C G A T G T C A
p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.657
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.1 +/- 23.6bp
Average Position of motif in Background33.4 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TAGGGCASGCASRTAC
--TBGCACGCAA----
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:TAGGGCASGCASRTAC
-----CACGCA-----
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TAGGGCASGCASRTAC
-----AAGGCAAGTGT
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TAGGGCASGCASRTAC
NNNNTTGGGCACNNCN----
 A C G T A C G T A C G T A C G T C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TAGGGCASGCASRTAC
TRAGGTCA---------
 A C G T C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TAGGGCASGCASRTAC
---BGCACGTA-----
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TAGGGCASGCASRTAC
----GCACGTNC----
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TAGGGCASGCASRTAC
AAGGTCAC--------
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TAGGGCASGCASRTAC
----GCACGTAY----
 C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TAGGGCASGCASRTAC
CAAAGGTCAG--------
 A C G T A C G T C A G T C G T A C T A G C A T G C A T G T A G C C G T A A T C G A C T G G T A C T C G A A T C G C T A G C A G T C T G A A T G C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T