Information for 7-TSCAGGGWSA (Motif 45)

C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A
Reverse Opposite:
A C G T A T C G G C T A A G T C A G T C A G T C C G A T C T A G A T G C C G T A
p-value:1e-5
log p-value:-1.286e+01
Information Content per bp:1.724
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif644.2
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets53.8 +/- 25.6bp
Average Position of motif in Background51.1 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TSCAGGGWSA--
--CAAGGHCANV
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TSCAGGGWSA----
CGCGCCGGGTCACGTA
 A C G T A C G T C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TSCAGGGWSA-
-GGAGGGGGAA
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T
A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TSCAGGGWSA
----AGGTCA
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TSCAGGGWSA----
AGAGCGGGGTCAAGTA
 A C G T A C G T C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TSCAGGGWSA-
-CCAGGAACAG
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TSCAGGGWSA
BTCAAGGTCA
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TSCAGGGWSA-----
NTNNNGGGGTCANGNNN
 A C G T A C G T C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TSCAGGGWSA-----
CTCCAGGGGTCAATTGA
 A C G T A C G T C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TSCAGGGWSA-
-TCAAGGTCAN
 C G A T T A C G G A T C C G T A A C T G A C T G C T A G C G A T A T G C G T C A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C