Information for 1-TGCCCATTGCCAC (Motif 2)

G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C
Reverse Opposite:
T A C G A C G T C T A G A T C G G T A C G T C A T C G A C G A T C T A G C A T G C T A G A G T C C G T A
p-value:1e-14
log p-value:-3.346e+01
Information Content per bp:1.783
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets50.9 +/- 19.8bp
Average Position of motif in Background53.2 +/- 48.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.63
Offset:6
Orientation:forward strand
Alignment:TGCCCATTGCCAC-
------TTGCCAAG
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCCCATTGCCAC-
TGACCTTTGCCCCA
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCCCATTGCCAC--
TGACCTTTGCCCTAN
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGCCCATTGCCAC-
TGACCTTTGCCCTA
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TGCCCATTGCCAC-
-----CGTGCCAAG
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TGCCCATTGCCAC--
-----GGTGCCAAGT
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCCCATTGCCAC--
TGTTCCCATTGTGTACT
 A C G T A C G T G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCCCATTGCCAC
GTTGCCATGGCAAC
 A C G T G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCATTGCCAC
NTGCCCTTGGGCGN
 A C G T G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TGCCCATTGCCAC--
------ATGCCAACC
 G A C T C T A G A G T C G A T C A G T C C G T A A C G T A C G T A C T G A T G C A G T C C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C