Information for 11-TCTGGCTGCTTGGCMT (Motif 18)

A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
Reverse Opposite:
T G C A C A G T C A T G A T G C A T G C G T C A C T G A A C T G G T A C C G T A T C A G G A T C G T A C G C T A C A T G G T C A
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.693
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.9 +/- 20.8bp
Average Position of motif in Background40.7 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCTGGCTGCTTGGCMT
-CTGGCAGNCTGCCA-
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:2
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------TCTGGCTGCTTGGCMT
ACTYKNATTCGTGNTACTTC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCTGGCTGCTTGGCMT--
---KGTTGCTAGGMAACA
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCTGCTTGGCMT
GGTCTGGCAT--------
 A C G T A C G T A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TCTGGCTGCTTGGCMT
CTTGGCANNNTGCCAA
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TCTGGCTGCTTGGCMT---
---NGTAGGTTGGCATNNN
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCTGGCTGCTTGGCMT
--CTGTTGCTAGGS--
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TCTGGCTGCTTGGCMT
-NCCGTTGCTANGNGN
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:TCTGGCTGCTTGGCMT
-TWGTCTGV-------
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:TCTGGCTGCTTGGCMT
-TTGGCATGGTGCCA-
 A C G T G A T C C A G T A C T G C A T G A G T C C G A T C A T G A G T C A G C T C A G T A T C G A T C G G A T C G T C A A C G T
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T