Information for 5-CATGGCCTSACAS (Motif 12)

A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
Reverse Opposite:
A T G C A C G T A T C G C A G T A T C G C G T A A C T G A C T G A G T C A G T C C G T A A C G T A C T G
p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.825
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.4 +/- 18.5bp
Average Position of motif in Background34.9 +/- 8.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATGGCCTSACAS
NTCAAGGTCA-----
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

TP73/MA0861.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATGGCCTSACAS---
GACATGTCTGGACATGTC
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G A C G T A C G T A C G T
C A T G T C G A A G T C C T G A C G A T T A C G G A C T G A T C A G C T C T A G C T A G C T G A A G T C C G T A G A C T A T C G G A C T G T A C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CATGGCCTSACAS
ACATGCCCGGGCAT
 A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CATGGCCTSACAS
CAAGGHCANV---
 A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

TP53/MA0106.3/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CATGGCCTSACAS---
AACATGCCCGGGCATGTC
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G A C G T A C G T A C G T
C T G A C T G A G A T C C G T A G C A T T C A G G A T C G A T C A G T C C T A G C T A G C T A G A T G C G C T A G C A T C T A G G A C T G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CATGGCCTSACAS
--TGACCTYA---
 A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CATGGCCTSACAS
BTCAAGGTCA-----
 A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CATGGCCTSACAS
CTAGGCCT-----
 A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCCTSACAS
GGGGCCGAGGCCTG----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATGGCCTSACAS
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C T G A C T G G T A C A G T C G C A T A T C G G C T A A T G C C G T A A T C G
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T