Information for 1-TACCTCATTA (Motif 5)

C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A
Reverse Opposite:
A G C T T G C A C G T A C A G T A T C G C G T A T C A G C T A G G C A T G C T A
p-value:1e-11
log p-value:-2.686e+01
Information Content per bp:1.663
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif9.13%
Number of Background Sequences with motif1370.0
Percentage of Background Sequences with motif2.81%
Average Position of motif in Targets46.3 +/- 27.0bp
Average Position of motif in Background49.3 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TACCTCATTA-----
GCAACCTCATTATNNNN
 A C G T A C G T C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TACCTCATTA-
-AGCTCATTAT
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TACCTCATTA-----
NNNACCTCATTATCNTN
 A C G T A C G T C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

PH0143.1_Pou2f1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TACCTCATTA------
TACTTAATTAATNNAN
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TACCTCATTA--
--GCTAATTAGC
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T
A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

GSX1/MA0892.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TACCTCATTA--
--CCTAATTAAA
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T
A C G T A C G T G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TACCTCATTA
--NCTAATTA
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

HOXA2/MA0900.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TACCTCATTA--
--CCTAATTACC
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T
A C G T A C G T T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TACCTCATTA--
--GCTAATTAAC
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T A C G T
A C G T A C G T T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:TACCTCATTA-
---CTAATTAA
 C G A T C G T A G A T C A G T C G C A T T A G C G T C A G C A T A C G T T C G A A C G T
A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A