Information for 3-GGCAATCAGCAAAAGC (Motif 3)

A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T A C G T A C G T A C G T A C T G A G T C A G C T A T C G G T C A A C G T A C G T A C T G A G T C A G T C
p-value:1e-14
log p-value:-3.378e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 25.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCAATCAGCAAAAGC
-CCAATCAA-------
 A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GGCAATCAGCAAAAGC
----GTCAGCANNTN-
 A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GGCAATCAGCAAAAGC
AAATGGACCAATCAG-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAATCAGCAAAAGC
AGCCAATCGG-------
 A C G T A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAATCAGCAAAAGC
TGGCACCATGCCAA---
 A C G T A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCAATCAGCAAAAGC
--AAATAAGAAAAAAC
 A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
A C G T A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGCAAAAGC
GGCCATTAAC------
 A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCAATCAGCAAAAGC
SCTGTCAVTCAV-------
 A C G T A C G T A C G T A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GGCAATCAGCAAAAGC
TGGACCAATCAGCACTCT-
 A C G T A C G T A C G T A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGCAATCAGCAAAAGC
CTGAGTCAGCAATTT-
 A C T G C T A G A G T C G T C A G T C A A C G T A T G C C T G A A C T G G T A C C G T A C G T A C G T A C G T A A C T G G T A C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T