Information for 6-TATGGCCGGC (Motif 25)

A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C T G A T C G A G T C G T A C C G T A A G C T C G T A
p-value:1e-6
log p-value:-1.520e+01
Information Content per bp:1.916
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif102.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets60.1 +/- 24.6bp
Average Position of motif in Background50.6 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TATGGCCGGC
TAATGGCGGNC
 A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

NEUROD2/MA0668.1/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TATGGCCGGC
ACCATATGGC----
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TATGGCCGGC
NAATTTTATTACCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TATGGCCGGC
TTTTATGGCTN--
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------TATGGCCGGC
ANTAATTTTATGGCCGN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TATGGCCGGC
TGATTTATGGCC---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

Neurog1/MA0623.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TATGGCCGGC
ACCATATGGT----
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C T G A T A G C T G A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TATGGCCGGC
GTTAATGGCC---
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TATGGCCGGC
TTTTATTGC----
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TATGGCCGGC
TGATTTATGGCC---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T G C A G T C C T A G A C T G A G T C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T