Information for 9-GGCACTTAMA (Motif 22)

A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
Reverse Opposite:
A C G T A C T G C G A T G T C A C G T A T C A G C G A T A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.835
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif47.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets63.1 +/- 22.7bp
Average Position of motif in Background51.8 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GGCACTTAMA
-GCACTTAA-
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCACTTAMA
ACCACTTAA-
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCACTTAMA
GGCVGTTR--
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCACTTAMA
ACCACTTAA-
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCACTTAMA
NNCAATTANN
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGCACTTAMA
AAGCACTTAA-
 A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGCACTTAMA
-BCMATTAG-
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGCACTTAMA
NGCAATTAAA
 A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGCACTTAMA
TGGCAGTTGG-
 A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

Myb/MA0100.2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGCACTTAMA
TGGCAGTTGN-
 A C G T A C T G A C T G A G T C C G T A A G T C A C G T A C G T C G T A T G A C C G T A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T