Information for 3-AATTAGAAAKTTC (Motif 6)

G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
Reverse Opposite:
A C T G C G T A C T G A G T C A C G A T A C G T A G C T G T A C G A C T C G T A C G T A A C G T A C G T
p-value:1e-9
log p-value:-2.095e+01
Information Content per bp:1.734
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif180.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets40.9 +/- 24.4bp
Average Position of motif in Background47.6 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
TATAATTATAATATTC
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0064.1_Sox14_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
GCTAATTATAATTATC
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0194.1_Zbtb12_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
TATCATTAGAACGCT-
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T

PDX1/MA0132.2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAAKTTC
GTAATTAG-------
 A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSX2/MA0893.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
ACTAATTAAA------
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
ACTAATTAGC------
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

HOXB2/MA0902.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
AGTAATTAAC------
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAAKTTC
GCAATTAG-------
 A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGAAAKTTC
NCAATTAN-------
 A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAAKTTC
TCTAATTAAA------
 A C G T A C G T A C G T G T C A C G T A C G A T C G A T C G T A A C T G C T G A T G C A G C T A C A G T A G C T A C G T G T A C
G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T