Information for 4-CATGCAGGCA (Motif 11)

A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C G A T C A C G T A C T G A G T C G T C A A C G T A C T G
p-value:1e-7
log p-value:-1.714e+01
Information Content per bp:1.870
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif106.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets51.8 +/- 30.4bp
Average Position of motif in Background54.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATGCAGGCA----
SCAGYCADGCATGAC
 A C G T A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CATGCAGGCA-
CATGCGGGTAC
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CATGCAGGCA-
-TBGCACGCAA
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CATGCAGGCA-----
----AAGGCAAGTGT
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

GCM2/MA0767.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATGCAGGCA
TATGCGGGTA
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CATGCAGGCA-
--TNNGGGCAG
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CATGCAGGCA---
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CATGCAGGCA-
--GGTTGGCAT
 A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATGCAGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATGCAGGCA--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C G T A C T G T G A C C G T A C T A G A C T G A G T C C G T A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T