Information for 1-GCCAATTAAAAGTAAT (Motif 8)

A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
Reverse Opposite:
G T C A A C G T A G C T C G T A A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T C T A G C T A G A T G C
p-value:1e-9
log p-value:-2.183e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 20.1bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
NGCAATTAAA------
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
-CCAATAAAAC-----
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
-CCAATAAAAA-----
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
-CCAATAAAAA-----
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCCAATTAAAAGTAAT
AACCCAATAAAATTCG--
 A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
-GCAATAAAAA-----
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
-CCAATTAA-------
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAX/MA0718.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
GCCAATTAAC------
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCAATTAAAAGTAAT
NCYAATAAAA------
 A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCAATTAAAAGTAAT
AATGCAATAAAATTTAT-
 A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T C G A T C G T A C G T A C G T A C G T A A C T G A C G T C T G A G T C A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T