Information for 3-SWTTWTATGTKTC (Motif 4)

A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
Reverse Opposite:
C T A G C G T A G T C A C G T A A G T C C G T A A C G T C G T A C G T A C G T A C G T A C G A T A T G C
p-value:1e-9
log p-value:-2.263e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.0 +/- 28.2bp
Average Position of motif in Background67.8 +/- 3.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--SWTTWTATGTKTC-
NGANTTTTATGGCTCN
 A C G T A C G T A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
--TTTTATGGCTN
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SWTTWTATGTKTC
--TTTTATKRGG-
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
--TTTTATTRGN-
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
-NTTTTATTGG--
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----SWTTWTATGTKTC
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
-NTTTTATGAC--
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----SWTTWTATGTKTC
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
-TTTTTATTGG--
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:SWTTWTATGTKTC
-NTTTTATTGG--
 A T C G C G T A A C G T A C G T C G A T A C G T C G T A A C G T A C T G A C G T A C G T A C G T A G T C
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T