Information for 1-CCTTCTATTG (Motif 3)

A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G
Reverse Opposite:
G A T C G C T A T G C A G A C T C G T A C T A G T C G A G C T A T C A G T C A G
p-value:1e-9
log p-value:-2.272e+01
Information Content per bp:1.666
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif9.66%
Number of Background Sequences with motif1588.1
Percentage of Background Sequences with motif3.24%
Average Position of motif in Targets51.5 +/- 26.5bp
Average Position of motif in Background50.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCTTCTATTG--
CCTTTTATAGNC
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTTCTATTG-
-NTTTTATTGG
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T
A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTTCTATTG-
-NTTTTATTGG
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTTCTATTG-
-TTTTTATTGG
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCTATTG----
NNANTTTTATTGGNNN
 A C G T A C G T A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTTCTATTG--
--TTTTATTRGN
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTTCTATTG-
--TTTTATTGC
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCTATTG----
NNAATTTTATTGGNTN
 A C G T A C G T A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTTCTATTG---
--TTTTATGGCTN
 A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTTCTATTG----
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A G T C A G T C C A G T A G C T A G T C G C A T C T G A A C G T C G A T C T A G A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T