Information for 3-AACAGCGCCATCT (Motif 4)

T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
Reverse Opposite:
C G T A C T A G C G T A G A C T A C T G A C T G A G T C A C T G A G T C A C G T A C T G A C G T A C G T
p-value:1e-20
log p-value:-4.703e+01
Information Content per bp:1.879
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.1 +/- 18.0bp
Average Position of motif in Background62.1 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCATCT
TCNNTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCATCT
TCNNTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCGCCATCT
TCNCTTTACAGCGNNNT--
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AACAGCGCCATCT
-AGCGCGCC----
 T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACAGCGCCATCT-
AAAATGGCGCCATTTT
 A C G T A C G T T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AACAGCGCCATCT--
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AACAGCGCCATCT
--GTCCGCCATTA
 T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AACAGCGCCATCT--------
-ANAGTGCCACCTGGTGGCCA
 T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AACAGCGCCATCT
CACAGN-------
 T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AACAGCGCCATCT---
------GCCATCTGTT
 T G C A C G T A G T A C C G T A A C T G A G T C A C T G A G T C A G T C C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T