Information for 11-CTAGACATGT (Motif 41)

A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T
Reverse Opposite:
G T C A A G T C C G T A A C G T A C T G A C G T A G T C A C G T C G T A A C T G
p-value:1e-5
log p-value:-1.336e+01
Information Content per bp:1.959
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 25.7bp
Average Position of motif in Background58.4 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CTAGACATGT
CGTCTAGACA---
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CTAGACATGT--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTAGACATGT------
AATATACATGTAAAATT
 A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAGACATGT
CCAGACAG--
 A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTAGACATGT------
TAAATACATGTAAAATT
 A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAGACATGT
CCAGACRSVB
 A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTAGACATGT
BCAGACWA--
 A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

TP73/MA0861.1/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:reverse strand
Alignment:-------CTAGACATGT-
GACATGTCNNGACATGTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T
C A T G C T G A T A G C C T G A G C A T A C T G G A C T G A T C G A T C T C G A C T A G C T G A A T G C G C T A G A C T A C T G A G C T G T A C

PH0083.1_Irx3_1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAGACATGT------
AAAATACATGTAATACT
 A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTAGACATGT------
AATATACATGTAAAACA
 A C G T A G T C A C G T C G T A A C T G C G T A A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A