Information for 2-ATAGCAGCCTGCAAAT (Motif 4)

C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T
Reverse Opposite:
C G T A A C G T A C G T A C G T A C T G A G T C C G T A C T A G A C T G A G T C C G A T A C T G A T G C A C G T C G T A A C G T
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.0 +/- 26.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT
-TGGCACCATGCCAA-
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:ATAGCAGCCTGCAAAT---
------ATATGCAAATNNN
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATAGCAGCCTGCAAAT
-TGGCAGNCTGCCAG-
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT----
----TTGTATGCAAATTAGA
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT----
----TTGTATGCAAATTAGA
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT----
----TTGTATGCAAATTAGA
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:ATAGCAGCCTGCAAAT
------TTATGCAAAT
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT---
-------WATGCAAATGAG
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT
------ATATGCAAAT
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:ATAGCAGCCTGCAAAT---
-------TATGCWAATBAV
 C G T A A C G T C G T A A T C G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G