Information for 1-TGSCCTCTAGGGG (Motif 1)

A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
Reverse Opposite:
A G T C G T A C G A T C A G T C A C G T C G T A A C T G C G T A A C T G A C T G T A G C A G T C T G C A
p-value:1e-12
log p-value:-2.841e+01
Information Content per bp:1.738
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif7.08%
Number of Background Sequences with motif48.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets48.9 +/- 15.4bp
Average Position of motif in Background59.0 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGSCCTCTAGGGG------
TGGCCACCAGGGGGCGCTA
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGSCCTCTAGGGG-------
TGGCCACCAGGTGGCACTNT
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGSCCTCTAGGGG---------
--GCCASCAGGGGGCGCYVNNG
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Znf423/MA0116.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGSCCTCTAGGGG---
-GGCACCCAGGGGTGC
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G A C G T A C G T A C G T
A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGSCCTCTAGGGG
-GTCCCCAGGGGA
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGSCCTCTAGGGG
TGACCYCT-----
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGSCCTCTAGGGG--
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGSCCTCTAGGGG
NNNNTTGACCCCTNNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGSCCTCTAGGGG
TGACCTYA-----
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGSCCTCTAGGGG
-NGTCCCNNGGGA
 A C G T C T A G A T C G A G T C A G T C C G A T A G T C G C A T C G T A C T A G C T A G A C T G C T A G
A C G T C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A