Information for 3-TTCGCATGGCTGA (Motif 3)

C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
Reverse Opposite:
A C G T G T A C C G T A A C T G G T A C A G T C G T C A C G A T A T C G A G T C A T C G C G T A C G T A
p-value:1e-13
log p-value:-3.193e+01
Information Content per bp:1.917
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.9 +/- 28.2bp
Average Position of motif in Background49.3 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0147.1_Max_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCATGGCTGA
NNGTCGCGTGNCAC-
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTCGCATGGCTGA
GTCATGCHTGRCTGS
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TTCGCATGGCTGA
BTVATTWGCATA-----
 A C G T A C G T A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCATGGCTGA
NNTTGGCANN-----
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCATGGCTGA-----
TTTMCGCTTSABTGAACACN
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TTCGCATGGCTGA
HTTTCCCASG-----
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TTCGCATGGCTGA
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTCGCATGGCTGA----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTCGCATGGCTGA
CTCATTTGCATW-----
 A C G T A C G T A C G T A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTCGCATGGCTGA
ATTTGCATA-----
 A C G T C G A T A C G T A T G C A C T G A T G C C G T A A C G T A C T G A C T G A G T C G A C T A C T G C G T A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T A C G T A C G T