Information for 4-GAAGCAGCTT (Motif 22)

A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T
Reverse Opposite:
C G T A C T G A C T A G A G T C A C G T A C T G A G T C A C G T A C G T T G A C
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.842
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif220.3
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets53.9 +/- 23.2bp
Average Position of motif in Background53.1 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAAGCAGCTT
AGGAAACAGCTG
 A C G T A C G T A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCAGCTT
NGAAGC-----
 A C G T A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAAGCAGCTT--
NNAGCAGCTGCT
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAAGCAGCTT--
--AGCAGCTGCT
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAAGCAGCTT
--ANCAGCTG
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GAAGCAGCTT-
-CAGCAGCTGN
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAAGCAGCTT--
-AAGAGGATTAG
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T A C G T
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAAGCAGCTT--
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAAGCAGCTT-----
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Nr2e3/MA0164.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GAAGCAGCTT-
----AAGCTTG
 A C T G G T C A C G T A C T A G T G A C T C G A A C T G A G T C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G