Information for 2-TCTWTGGGACTTRYCA (Motif 2)

C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
Reverse Opposite:
C A G T A T C G C T G A A G T C C G T A C T G A A C T G A C G T G T A C G T A C A G T C G T C A G C T A C T G A C T A G G T C A
p-value:1e-14
log p-value:-3.244e+01
Information Content per bp:1.748
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.2 +/- 16.4bp
Average Position of motif in Background86.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HES7/MA0822.1/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA
----TGGCACGTGCCA
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

HES5/MA0821.1/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA
----TGGCACGTGCCG
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA
-----GGGAATTTCC-
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TCTWTGGGACTTRYCA
-----GGGAATTTCC-
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TCTWTGGGACTTRYCA
-----GGGGATTTCC-
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA
----TGACACCTGTCA
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA-
------NNACTTGCCTT
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TCTWTGGGACTTRYCA
----NGGGGATTTCCC
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:TCTWTGGGACTTRYCA
YCTTTGTTCC------
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:TCTWTGGGACTTRYCA
----TGACACCTGTCA
 C A G T A G T C A G C T C G A T A C G T A C T G C A T G A C T G G T C A G T A C A G C T A C G T C T A G A G C T A T G C G C T A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A